1. Forum
  2. Usenet
  3. LINUX.DEBIAN.BUGS.RC

  • Bug#1094713: mdtraj: autopkgtests fail with numpy 2.x

    From Andrey Rakhmatullin@21:1/5 to All on Thu Jan 30 12:40:01 2025
    Source: mdtraj
    Version: 1.10.1-2
    Severity: serious
    Control: block 1082237 by -1

    https://ci.debian.net/packages/m/mdtraj/testing/amd64/57221846/

    "RuntimeError: Failed to converge after 50 iterations"
    "AssertionError: Dielectric tolerance not met!"


    -- System Information:
    Debian Release: trixie/sid
    APT prefers unstable
    APT policy: (500, 'unstable'), (500, 'testing'), (101, 'experimental') Architecture: amd64 (x86_64)
    Foreign Architectures: i386

    Kernel: Linux 6.12.8-amd64 (SMP w/16 CPU threads; PREEMPT)
    Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
    Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set
    Shell: /bin/sh linked to /usr/bin/dash
    Init: systemd (via /run/systemd/system)
    LSM: AppArmor: enabled

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Debian Bug Tracking System@21:1/5 to All on Tue Feb 11 05:00:02 2025
    This is a multi-part message in MIME format...

    Your message dated Tue, 11 Feb 2025 03:50:33 +0000
    with message-id <E1thhI9-001xe5-OW@fasolo.debian.org>
    and subject line Bug#1094713: fixed in mdtraj 1.10.3-1
    has caused the Debian Bug report #1094713,
    regarding mdtraj: autopkgtests fail with numpy 2.x
    to be marked as done.

    This means that you claim that the problem has been dealt with.
    If this is not the case it is now your responsibility to reopen the
    Bug report if necessary, and/or fix the problem forthwith.

    (NB: If you are a system administrator and have no idea what this
    message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org
    immediately.)


    --
    1094713: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1094713
    Debian Bug Tracking System
    Contact owner@bugs.debian.org with problems

    Received: (at submit) by bugs.debian.org; 30 Jan 2025 11:32:58 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02
    (2021-04-09) on buxtehude.debian.org
    X-Spam-Level:
    X-Spam-Status: No, score=-8.9 required=4.0 tests=BAYES_00,DKIM_SIGNED,
    DKIM_VALID,FORGED_SPF_HELO,FOURLA,FROMDEVELOPER,SPF_HELO_PASS,SPF_NONE,
    XMAILER_REPORTBUG autolearn=ham autolearn_force=no
    version=3.4.6-bugs.debian.org_2005_01_02
    X-Spam-Bayes: score:0.0000 Tokens: new, 15; hammy, 150; neutral, 46; spammy,
    0. spammytokens: hammytokens:0.000-+--trixie, 0.000-+--sk:taint_o,
    0.000-+--sk:TAINT_O, 0.000-+--sk:taint_u, 0.000-+--sk:TAINT_U Return-path: <wrar@debian.org>
    Received: from wrar.name ([116.203.248.210]:47320 helo=durkon.wrar.name)
    by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256)
    (Exim 4.94.2)
    (env