Package: src:python-sqt
Version: 0.8.0-8
Severity: serious
Tags: ftbfs trixie sid
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
pybuild --clean -i python{version} -p "3.12 3.13"
I: pybuild base:311: python3.12 setup.py clean /<<PKGBUILDDIR>>/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean /<<PKGBUILDDIR>>/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build' (and everything under it)
'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it
rm -rf .pybuild/
find . -name \*.pyc -exec rm {} \;
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/python3-sqt.substvars debian/files
rm -fr -- debian/python3-sqt/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
pybuild --configure -i python{version} -p "3.12 3.13"
I: pybuild base:311: python3.12 setup.py config /<<PKGBUILDDIR>>/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
I: pybuild base:311: python3.13 setup.py config /<<PKGBUILDDIR>>/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s'
LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running config
dh_auto_build -O--buildsystem=pybuild
pybuild --build -i python{version} -p "3.12 3.13"
I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/<<PKGBUILDDIR>>/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/sqt/_helpers.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling sqt/_helpers.pyx because it changed.
[1/1] Cythonizing sqt/_helpers.pyx
building 'sqt._helpers' extension
creating build/temp.linux-x86_64-cpython-312/sqt
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/
python3.12 -c sqt/_helpers.c -o build/temp.linux-x86_64-cpython-312/sqt/_helpers.o
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/sqt/_helpers.o -L/usr/lib/x86_64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-x86_64-linux-gnu.so
I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'test_suite'
warnings.warn(msg)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/qualtrim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/colorspace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/_version.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/cigar.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/ansicolor.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/_codons.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/compat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/region.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/intervaltree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt
copying sqt/math.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/args.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt copying sqt/reads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
copying sqt/io/sff.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
copying sqt/io/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
copying sqt/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
copying sqt/io/gtf.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
copying sqt/io/bam.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/io
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/translate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/mutate.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/randomseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/cutvect.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/qualityguess.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/checkvcfref.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/readcov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/align.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/samfixn.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/histogram.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/addadapt.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/fastxmod.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/samsetop.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/simreads.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/bamstats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/fastastats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/checkfastqpe.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/bameof.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/coverage.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/compare_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/fixbam64.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/fastagrep.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/readlenhisto.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/chars.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/fastaextract.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/bam2fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
copying sqt/commands/qgramfreq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/commands
UPDATING /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/_version.py
set /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/_version.py to '0.8.0'
running build_ext
/<<PKGBUILDDIR>>/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION):
building 'sqt._helpers' extension
creating build/temp.linux-x86_64-cpython-313/sqt
x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/
python3.13 -c sqt/_helpers.c -o build/temp.linux-x86_64-cpython-313/sqt/_helpers.o
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/sqt/_helpers.o -L/usr/lib/x86_64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/sqt/_helpers.cpython-313-x86_64-linux-gnu.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
LC_ALL=C.UTF-8 dh_auto_test
pybuild --test --test-pytest -i python{version} -p "3.12 3.13"
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build
configfile: pytest.ini
plugins: typeguard-4.4.1
collected 45 items
tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py .....Fatal Python error: Aborted
Current thread 0x00007f4badb22080 (most recent call first):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build/tests/testdna.py", line 74 in test_nt_to_aa
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main
File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module>
File "<frozen runpy>", line 88 in _run_code
File "<frozen runpy>", line 198 in _run_module_as_main
Extension modules: sqt._helpers (total: 1)
Aborted
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=134: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build
configfile: pytest.ini
plugins: typeguard-4.4.1
collected 45 items
tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py .....Fatal Python error: Aborted
Current thread 0x00007f0adaf8d080 (most recent call first):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build/tests/testdna.py", line 74 in test_nt_to_aa
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 159 in pytest_pyfunc_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/python.py", line 1627 in runtest
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 174 in pytest_runtest_call
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 242 in <lambda>
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 341 in from_call
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 241 in call_and_report
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 132 in runtestprotocol
File "/usr/lib/python3/dist-packages/_pytest/runner.py", line 113 in pytest_runtest_protocol
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 362 in pytest_runtestloop
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 337 in _main
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 283 in wrap_session
File "/usr/lib/python3/dist-packages/_pytest/main.py", line 330 in pytest_cmdline_main
File "/usr/lib/python3/dist-packages/pluggy/_callers.py", line 103 in _multicall
File "/usr/lib/python3/dist-packages/pluggy/_manager.py", line 120 in _hookexec
File "/usr/lib/python3/dist-packages/pluggy/_hooks.py", line 513 in __call__
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 175 in main
File "/usr/lib/python3/dist-packages/_pytest/config/__init__.py", line 201 in console_main
File "/usr/lib/python3/dist-packages/pytest/__main__.py", line 9 in <module>
File "<frozen runpy>", line 88 in _run_code
File "<frozen runpy>", line 198 in _run_module_as_main
Extension modules: sqt._helpers (total: 1)
Aborted
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=134: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_sqt/build; python3.13 -m pytest tests
rm -fr -- /tmp/dh-xdg-rundir-i3NBBpiT
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.13" returned exit code 13
make[1]: *** [debian/rules:13: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202502/
About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-sqt, so that this is still
visible in the BTS web page for this package.
Thanks.
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