Source: skimage
Version: 0.25.2-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20250413 ftbfs-trixie

Hi,

During a rebuild of all packages in testing (trixie), your package failed
to build on arm64.


Relevant part (hopefully):

make[1]: Entering directory '/build/reproducible-path/skimage-0.25.2'
# pass
make[1]: Leaving directory '/build/reproducible-path/skimage-0.25.2'
dh_auto_test -O--buildsystem=pybuild -Npython3-skimage -Npython-skimage-doc
I: pybuild base:311: cd /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build; python3.13 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.13.2, pytest-8.3.5, pluggy-1.5.0
rootdir: /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build configfile: pyproject.toml
testpaths: skimage, benchmarks
plugins: doctestplus-1.4.0, typeguard-4.4.2
collected 9012 items / 4 skipped

skimage/_shared/tests/test_coord.py .................................... [ 0%]
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skimage/_shared/tests/test_dtype.py .................. [ 0%]
skimage/_shared/tests/test_fast_exp.py . [ 0%]
skimage/_shared/tests/test_geometry.py ... [ 0%]
skimage/_shared/tests/test_interpolation.py . [ 0%]
skimage/_shared/tests/test_safe_as_int.py .. [ 0%]
skimage/_shared/tests/test_testing.py ....... [ 0%]
skimage/_shared/tests/test_utils.py .................................... [ 1%]
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skimage/_shared/tests/test_version_requirements.py .... [ 2%]
skimage/_shared/tests/test_warnings.py ......... [ 2%]
skimage/color/tests/test_adapt_rgb.py ....... [ 2%]
skimage/color/tests/test_colorconv.py .................................. [ 2%]
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skimage/color/tests/test_colorlabel.py ............................ [ 6%]
skimage/color/tests/test_delta_e.py ............................. [ 6%]
skimage/data/tests/test_data.py ss......s...........s.sssss. [ 6%]
skimage/draw/tests/test_draw.py ........................................ [ 7%]
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skimage/draw/tests/test_draw3d.py ........ [ 7%]
skimage/draw/tests/test_draw_nd.py ... [ 7%]
skimage/draw/tests/test_polygon2mask.py . [ 7%]
skimage/draw/tests/test_random_shapes.py ................... [ 7%]
skimage/exposure/tests/test_exposure.py ................................ [ 8%]
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skimage/exposure/tests/test_histogram_matching.py ............. [ 9%]
skimage/feature/tests/test_basic_features.py ............. [ 9%]
skimage/feature/tests/test_blob.py ..................................... [ 9%]
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skimage/feature/tests/test_brief.py ............... [ 10%]
skimage/feature/tests/test_canny.py ............ [ 10%]
skimage/feature/tests/test_cascade.py . [ 10%]
skimage/feature/tests/test_censure.py ....... [ 10%]
skimage/feature/tests/test_corner.py ................................... [ 10%]
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skimage/feature/tests/test_daisy.py ........ [ 11%]
skimage/feature/tests/test_fisher_vector.py ............. [ 11%]
skimage/feature/tests/test_haar.py ..................................... [ 11%]
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skimage/feature/tests/test_hog.py .................... [ 12%]
skimage/feature/tests/test_match.py ...... [ 12%]
skimage/feature/tests/test_orb.py ............. [ 12%]
skimage/feature/tests/test_peak.py ..................................... [ 12%]
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skimage/feature/tests/test_sift.py ....... [ 13%]
skimage/feature/tests/test_template.py ........... [ 13%]
skimage/feature/tests/test_texture.py ................................. [ 13%]
skimage/feature/tests/test_util.py ................ [ 13%]
skimage/filters/rank/tests/test_rank.py ................................ [ 14%]
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skimage/filters/tests/test_correlate.py ................... [ 19%]
skimage/filters/tests/test_edges.py .................................... [ 19%]
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skimage/filters/tests/test_fft_based.py ................................ [ 20%]
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skimage/filters/tests/test_gabor.py ................ [ 21%]
skimage/filters/tests/test_gaussian.py ................................. [ 21%]
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skimage/filters/tests/test_lpi_filter.py ............. [ 21%]
skimage/filters/tests/test_median.py .............. [ 21%]
skimage/filters/tests/test_ridges.py ........................ [ 22%]
skimage/filters/tests/test_thresholding.py ............................. [ 22%]
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skimage/filters/tests/test_unsharp_mask.py ............................. [ 23%]
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skimage/filters/tests/test_window.py ................. [ 64%]
skimage/future/tests/test_trainable_segmentation.py .... [ 64%]
skimage/graph/tests/test_anisotropy.py . [ 64%]
skimage/graph/tests/test_connect.py . [ 64%]
skimage/graph/tests/test_flexible.py . [ 64%]
skimage/graph/tests/test_heap.py . [ 64%]
skimage/graph/tests/test_mcp.py ............... [ 64%]
skimage/graph/tests/test_pixel_graph.py .......... [ 64%]
skimage/graph/tests/test_rag.py ........F... [ 65%]
skimage/graph/tests/test_spath.py ... [ 65%]
skimage/io/tests/test_collection.py ............. [ 65%]
skimage/io/tests/test_imageio.py .......... [ 65%]
skimage/io/tests/test_io.py ...x............. [ 65%]
skimage/io/tests/test_mpl_imshow.py ....... [ 65%]
skimage/io/tests/test_multi_image.py ....... [ 65%]
skimage/io/tests/test_pil.py ......................... [ 66%]
skimage/io/tests/test_plugin.py ........... [ 66%]
skimage/io/tests/test_sift.py .. [ 66%]
skimage/io/tests/test_tifffile.py ...................................... [ 66%]
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skimage/measure/tests/test_block.py .......... [ 66%]
skimage/measure/tests/test_blur_effect.py ...s..... [ 67%]
skimage/measure/tests/test_ccomp.py .................... [ 67%]
skimage/measure/tests/test_colocalization.py ..... [ 67%]
skimage/measure/tests/test_entropy.py .. [ 67%]
skimage/measure/tests/test_find_contours.py .XX.............. [ 67%]
skimage/measure/tests/test_fit.py ...............X.............. [ 67%]
skimage/measure/tests/test_label.py ...... [ 67%]
skimage/measure/tests/test_marching_cubes.py ........ [ 68%]
skimage/measure/tests/test_moments.py .................................. [ 68%]
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skimage/measure/tests/test_pnpoly.py ..... [ 68%]
skimage/measure/tests/test_polygon.py .. [ 68%]
skimage/measure/tests/test_profile.py ......................... [ 69%]
skimage/measure/tests/test_regionprops.py .............................. [ 69%]
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skimage/metrics/tests/test_segmentation_metrics.py ...... [ 70%]
skimage/metrics/tests/test_set_metrics.py .............................. [ 71%]
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skimage/metrics/tests/test_simple_metrics.py ................ [ 71%]
skimage/metrics/tests/test_structural_similarity.py .................... [ 71%]
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skimage/morphology/tests/test_binary.py ................................ [ 72%]
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skimage/morphology/tests/test_convex_hull.py .......... [ 75%]
skimage/morphology/tests/test_extrema.py ....................... [ 75%]
skimage/morphology/tests/test_flood_fill.py ................... [ 75%]
skimage/morphology/tests/test_footprints.py ............................ [ 76%]
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skimage/morphology/tests/test_gray.py s................................. [ 78%]
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skimage/morphology/tests/test_isotropic.py ........ [ 82%]
skimage/morphology/tests/test_max_tree.py ........ [ 82%]
skimage/morphology/tests/test_misc.py .................................. [ 83%]
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skimage/morphology/tests/test_reconstruction.py ........................ [ 84%]
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skimage/morphology/tests/test_skeletonize.py ........................... [ 84%]
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skimage/morphology/tests/test_util.py .................... [ 85%]
skimage/registration/tests/test_ilk.py ..................... [ 85%]
skimage/registration/tests/test_masked_phase_cross_correlation.py ..s... [ 85%]
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skimage/registration/tests/test_phase_cross_correlation.py ............. [ 85%]
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skimage/registration/tests/test_tvl1.py ......... [ 86%]
skimage/restoration/tests/test_denoise.py .............................. [ 86%]
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skimage/restoration/tests/test_inpaint.py .............................. [ 88%]
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skimage/restoration/tests/test_j_invariant.py ........ [ 88%]
skimage/restoration/tests/test_restoration.py .................ssssss [ 88%]
skimage/restoration/tests/test_rolling_ball.py ...................s [ 88%]
skimage/restoration/tests/test_unwrap.py ................ [ 89%]
skimage/segmentation/tests/test_active_contour_model.py ........... [ 89%]
skimage/segmentation/tests/test_boundaries.py .............. [ 89%]
skimage/segmentation/tests/test_chan_vese.py ............. [ 89%]
skimage/segmentation/tests/test_clear_border.py ........ [ 89%]
skimage/segmentation/tests/test_expand_labels.py .................... [ 89%]
skimage/segmentation/tests/test_felzenszwalb.py ...... [ 89%]
skimage/segmentation/tests/test_join.py ................................ [ 90%]
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skimage/segmentation/tests/test_morphsnakes.py ....... [ 90%]
skimage/segmentation/tests/test_quickshift.py ............... [ 90%]
skimage/segmentation/tests/test_random_walker.py ....................... [ 90%]
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skimage/segmentation/tests/test_slic.py ................................ [ 91%]
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skimage/segmentation/tests/test_watershed.py ........................... [ 91%]
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skimage/transform/tests/test_finite_radon_transform.py . [ 91%]
skimage/transform/tests/test_geometric.py .............................s [ 92%]
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skimage/transform/tests/test_hough_transform.py ........................ [ 92%]
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skimage/transform/tests/test_integral.py ............. [ 92%]
skimage/transform/tests/test_pyramids.py ............................... [ 93%]
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skimage/transform/tests/test_radon_transform.py ........................ [ 93%]
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skimage/transform/tests/test_thin_plate_splines.py ...... [ 94%]
skimage/transform/tests/test_warps.py ......XXXXXX...................... [ 95%]
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skimage/util/tests/test_arraycrop.py ........ [ 96%]
skimage/util/tests/test_compare.py ....... [ 96%]
skimage/util/tests/test_dtype.py ....................................... [ 97%]
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skimage/util/tests/test_invert.py ...... [ 97%]
skimage/util/tests/test_labels.py ..... [ 97%]
skimage/util/tests/test_lookfor.py . [ 97%]
skimage/util/tests/test_map_array.py ................................... [ 97%]
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skimage/util/tests/test_montage.py .................. [ 99%]
skimage/util/tests/test_random_noise.py .............. [ 99%]
skimage/util/tests/test_regular_grid.py .... [ 99%]
skimage/util/tests/test_shape.py .................. [ 99%]
skimage/util/tests/test_slice_along_axes.py ......... [ 99%]
skimage/util/tests/test_unique_rows.py ..... [100%]

=================================== FAILURES ===================================
_____________________________ test_reproducibility _____________________________

def test_reproducibility():
"""ensure cut_normalized returns the same output for the same input,
when specifying random seed
"""
img = data.coffee()
labels1 = segmentation.slic(img, compactness=30, n_segments=400, start_label=0)
g = graph.rag_mean_color(img, labels1, mode='similarity')
results = [None] * 4
for i in range(len(results)):
results[i] = graph.cut_normalized(
labels1, g, in_place=False, thresh=1e-3, rng=1234
)
graph.cut_normalized(labels1, g, in_place=False, thresh=1e-3, rng=1234)

for i in range(len(results) - 1):

assert_array_equal(results[i], results[i + 1])

E AssertionError:
E Arrays are not equal
E
E Mismatched elements: 196301 / 240000 (81.8%)
E Max absolute difference among violations: 394
E Max relative difference among violations: 1.
E ACTUAL: array([[0, 0, 0, ..., 0, 0, 0],
E [0, 0, 0, ..., 0, 0, 0],
E [0, 0, 0, ..., 0, 0, 0],...
E DESIRED: array([[ 0, 0, 0, ..., 11, 11, 11],
E [ 0, 0, 0, ..., 11, 11, 11],
E [ 0, 0, 0, ..., 11, 11, 11],...

skimage/graph/tests/test_rag.py:224: AssertionError =================================== XPASSES ====================================
=========================== short test summary info ============================
SKIPPED [1] skimage/io/tests/test_fits.py:6: could not import 'astropy': No module named 'astropy'
SKIPPED [1] skimage/io/tests/test_imread.py:17: could not import 'imread': No module named 'imread'
SKIPPED [1] skimage/io/tests/test_simpleitk.py:8: could not import 'SimpleITK': No module named 'SimpleITK'
SKIPPED [1] skimage/util/tests/test_apply_parallel.py:10: could not import 'dask.array': No module named 'dask'
SKIPPED [1] skimage/data/tests/test_data.py:10: test fails without pooch SKIPPED [1] skimage/data/tests/test_data.py:18: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:74: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:150: Needs python3-pooch and internet connection
SKIPPED [1] skimage/data/tests/test_data.py:165: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:173: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:181: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:192: requires data downloaded from internet
SKIPPED [1] skimage/data/tests/test_data.py:203: requires data downloaded from internet
SKIPPED [1] skimage/exposure/tests/test_exposure.py:1370: dask python library is not installed
SKIPPED [1] skimage/exposure/tests/test_exposure.py:1383: dask python library is not installed
SKIPPED [54] skimage/filters/rank/tests/test_rank.py:157: requires data downloaded from internet
SKIPPED [1] skimage/measure/tests/test_blur_effect.py:47: Needs python3-pooch and internet connection
SKIPPED [1] skimage/morphology/tests/test_gray.py:71: requires data downloaded from internet
SKIPPED [24] skimage/morphology/tests/test_gray.py:454: requires data downloaded from internet
SKIPPED [6] skimage/morphology/tests/test_gray.py:474: requires data downloaded from internet
SKIPPED [1] skimage/registration/tests/test_masked_phase_cross_correlation.py:62: Needs python3-pooch and internet connection
SKIPPED [16] skimage/registration/tests/test_phase_cross_correlation.py:180: requires data downloaded from internet
SKIPPED [6] skimage/restoration/tests/test_restoration.py:165: requires data downloaded from internet
SKIPPED [1] skimage/restoration/tests/test_rolling_ball.py:93: Needs python3-pooch and internet connection
SKIPPED [1] skimage/transform/tests/test_geometric.py:648: Fails on Debian XFAIL skimage/io/tests/test_io.py::test_imread_http_url - Local server does not run at build time
XPASS skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float16] - https://github.com/scikit-image/scikit-image/issues/6670
XPASS skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float32] - https://github.com/scikit-image/scikit-image/issues/6670
XPASS skimage/color/tests/test_colorconv.py::test_lab_lch_roundtrip_dtypes[float64] - https://github.com/scikit-image/scikit-image/issues/6670
XPASS skimage/measure/tests/test_find_contours.py::test_nodata[0.5] - Fails on mipsel
XPASS skimage/measure/tests/test_find_contours.py::test_nodata[None] - Fails on mipsel
XPASS skimage/measure/tests/test_fit.py::test_ellipse_parameter_stability - https://github.com/scikit-image/scikit-image/issues/7061
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[0] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[1] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_image_containing_nans[3] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[0] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[1] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_warp_clip_cval_is_nan[3] - Fails on mipsel
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-True-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-True-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-False-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-True-False-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-True-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-True-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-False-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[float64-False-False-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-True-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-True-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-False-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-True-False-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-True-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-True-1] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-False-0] - Fails on mips64el
XPASS skimage/transform/tests/test_warps.py::test_resize_clip[uint8-False-False-1] - Fails on mips64el
FAILED skimage/graph/tests/test_rag.py::test_reproducibility - AssertionError:
= 1 failed, 8860 passed, 126 skipped, 1 xfailed, 28 xpassed in 212.17s (0:03:32) =
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd /build/reproducible-path/skimage-0.25.2/.pybuild/cpython3_3.13/build; python3.13 -m pytest
dh_auto_test: error: pybuild --test -i python{version} -p 3.13 returned exit code 13

The full build log is available from: http://qa-logs.debian.net/2025/04/13/skimage_0.25.2-1_testing.log

All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20250413;users=lucas@debian.org
or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20250413&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.

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Your message dated Tue, 22 Apr 2025 11:49:30 +0000
with message-id <E1u7C82-007cVg-SF@fasolo.debian.org>
and subject line Bug#1103004: fixed in skimage 0.25.2-2
has caused the Debian Bug report #1103004,
regarding skimage: FTBFS in testing/arm64: dh_auto_test: error: pybuild --test -i python{version} -p 3.13 returned exit code 13
to be marked as done.

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--
1103004: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103004
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems

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SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY,USER_IN_DKIM_WELCOMELIST,
USER_IN_DKIM_WHITELIST,WORD_WITHOUT_VOWELS autolearn=ham
autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 258; hammy, 150; neutral, 407; spammy,
0. spammytokens:
hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin,
0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311,
0.000-+--H*RT:311, 0.000-+--H*RT:108
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