• Bug#1103202: rapache: FTBFS: mod_R.c:1241:11: error: implicit declarati

    From Santiago Vila@21:1/5 to All on Tue Apr 15 02:30:03 2025
    Package: src:rapache
    Version: 1.2.10-2
    Severity: serious
    Tags: ftbfs trixie sid

    Dear maintainer:

    During a rebuild of all packages in unstable, your package failed to build:

    --------------------------------------------------------------------------------
    [...]
    debian/rules clean
    dh clean --with apache2
    dh_clean
    debian/rules binary
    dh binary --with apache2
    dh_update_autotools_config
    dh_autoreconf
    autoreconf: warning: autoconf input should be named 'configure.ac', not 'configure.in'
    aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
    libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'.
    libtoolize: copying file 'tools/ltmain.sh'
    libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
    libtoolize: copying file 'm4/libtool.m4'
    libtoolize: copying file 'm4/ltoptions.m4'
    libtoolize: copying file 'm4/ltsugar.m4'
    libtoolize: copying file 'm4/ltversion.m4'
    libtoolize: copying file 'm4/lt~obsolete.m4'
    aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in'
    configure.in:13: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.in:13: You should run autoupdate.
    m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
    configure.in:13: the top level
    configure.in:162: warning: AC_OUTPUT should be used without arguments. configure.in:162: You should run autoupdate.
    automake: warning: autoconf input should be named 'configure.ac', not 'configure.in'
    configure.in:13: installing 'tools/compile'
    configure.in:5: installing 'tools/missing'
    Makefile.am:26: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
    debian/rules override_dh_auto_configure
    make[1]: Entering directory '/<<PKGBUILDDIR>>'
    dh_auto_configure -- --with-R=/usr/bin/R --with-apache2-apxs=/usr/bin/apxs2 --with-apreq2-config=/usr/bin/apreq2-config
    ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/
    lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-R=/usr/bin/R --with-apache2-apxs=/usr/bin/apxs2 --with-apreq2-config=/usr/bin/apreq2-config
    checking for a BSD-compatible install... /usr/bin/install -c
    checking whether sleep supports fractional seconds... yes
    checking filesystem timestamp resolution... 0.01
    checking whether build environment is sane... yes
    checking for a race-free mkdir -p... /usr/bin/mkdir -p
    checking for gawk... no
    checking for mawk... mawk
    checking whether make sets $(MAKE)... yes
    checking whether make supports nested variables... yes
    checking xargs -n works... yes
    checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-pc-linux-gnu
    checking host system type... x86_64-pc-linux-gnu
    checking how to print strings... printf
    checking for gcc... gcc
    checking whether the C compiler works... yes
    checking for C compiler default output file name... a.out
    checking for suffix of executables...
    checking whether we are cross compiling... no
    checking for suffix of object files... o
    checking whether the compiler supports GNU C... yes
    checking whether gcc accepts -g... yes
    checking for gcc option to enable C11 features... none needed
    checking whether gcc understands -c and -o together... yes
    checking for a sed that does not truncate output... /usr/bin/sed
    checking for grep that handles long lines and -e... /usr/bin/grep
    checking for egrep... /usr/bin/grep -E
    checking for fgrep... /usr/bin/grep -F
    checking for ld used by gcc... /usr/bin/ld
    checking if the linker (/usr/bin/ld) is GNU ld... yes
    checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
    checking the name lister (/usr/bin/nm -B) interface... BSD nm
    checking whether ln -s works... yes
    checking the maximum length of command line arguments... 1572864
    checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
    checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
    checking for /usr/bin/ld option to reload object files... -r
    checking for file... file
    checking for objdump... objdump
    checking how to recognize dependent libraries... pass_all
    checking for dlltool... no
    checking how to associate runtime and link libraries... printf %s\n
    checking for ranlib... ranlib
    checking for ar... ar
    checking for archiver @FILE support... @
    checking for strip... strip
    checking command to parse /usr/bin/nm -B output from gcc object... ok
    checking for sysroot... no
    checking for a working dd... /usr/bin/dd
    checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
    checking for mt... no
    checking if : is a manifest tool... no
    checking for stdio.h... yes
    checking for stdlib.h... yes
    checking for string.h... yes
    checking for inttypes.h... yes
    checking for stdint.h... yes
    checking for strings.h... yes
    checking for sys/stat.h... yes
    checking for sys/types.h... yes
    checking for unistd.h... yes
    checking for dlfcn.h... yes
    checking for objdir... .libs
    checking if gcc supports -fno-rtti -fno-exceptions... no
    checking for gcc option to produce PIC... -fPIC -DPIC
    checking if gcc PIC flag -fPIC -DPIC works... yes
    checking if gcc static flag -static works... yes
    checking if gcc supports -c -o file.o... yes
    checking if gcc supports -c -o file.o... (cached) yes
    checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
    checking whether -lc should be explicitly linked in... no
    checking dynamic linker characteristics... GNU/Linux ld.so
    checking how to hardcode library paths into programs... immediate
    checking whether stripping libraries is possible... yes
    checking if libtool supports shared libraries... yes
    checking whether to build shared libraries... yes
    checking whether to build static libraries... yes
    checking for sys/types.h... (cached) yes
    checking for unistd.h... (cached) yes
    checking for stdlib.h... (cached) yes
    checking for --with-apxs... no
    checking for apxs... /usr/bin/apxs
    checking for R Program... /usr/bin/R
    checking for apreq2-config... checking that generated files are newer than configure... done
    configure: creating ./config.status
    config.status: creating Makefile
    config.status: creating mod_R.h
    config.status: executing libtool commands
    make[1]: Leaving directory '/<<PKGBUILDDIR>>'
    dh_auto_build
    make -j2
    make[1]: Entering directory '/<<PKGBUILDDIR>>'
    R_DEFAULT_PACKAGES=NULL /usr/bin/R --vanilla --no-readline --slave -f tools/config_http.R --args /usr/bin/apxs /usr/sbin/apache2

    Configuring libapreq2

    touch .apreq-config

    Compiling mod_R

    /usr/bin/apxs -I/usr/share/R/include -I/usr/include/apreq2 -I/usr/include/apr-1.0 -I/usr/include -c mod_R.c -Wl,--export-dynamic -fopenmp -Wl,-z,relro -L/usr/lib/R/lib -lR -lpcre2-8 -ldeflate -lzstd -llzma -lbz2 -lz -ltirpc -lrt -ldl -lm -licuuc -
    licui18n -L/usr/lib/x86_64-linux-gnu -lapreq2
    /usr/share/apr-1.0/build/libtool --mode=compile --tag=disable-static x86_64-linux-gnu-gcc -prefer-pic -pipe -g -O2 -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -
    Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_SOURCE -I/usr/include/apache2 -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include -I/usr/share/R/include -I/usr/include/apreq2 -I/usr/include/apr-1.0 -I/usr/include -c -o mod_R.
    lo mod_R.c && touch mod_R.slo
    sh: 1: /usr/sbin/apache2: not found
    libtool: compile: x86_64-linux-gnu-gcc -pipe -g -O2 -Werror=implicit-function-declaration -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -DLINUX -D_REENTRANT -D_GNU_
    SOURCE -I/usr/include/apache2 -I/usr/include/apr-1.0 -I/usr/include/apr-1.0 -I/usr/include -I/usr/share/R/include -I/usr/include/apreq2 -I/usr/include/apr-1.0 -I/usr/include -c mod_R.c -fPIC -DPIC -o .libs/mod_R.o
    sh: 1: /usr/sbin/apache2: not found
    sh: 1: /usr/sbin/apache2: not found
    mod_R.c:94:9: warning: "HAVE_UINTPTR_T" redefined
    94 | #define HAVE_UINTPTR_T
    | ^~~~~~~~~~~~~~
    In file included from /usr/share/R/include/R.h:68,
    from mod_R.c:72:
    /usr/share/R/include/Rconfig.h:31:9: note: this is the location of the previous definition
    31 | #define HAVE_UINTPTR_T 1
    | ^~~~~~~~~~~~~~
    mod_R.c: In function 'CallFun1str':
    mod_R.c:1241:11: error: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
    1241 | text = Calloc(strlen(fun)+strlen(arg)+5,char);
    | ^~~~~~
    | calloc
    mod_R.c:1241:44: error: expected expression before 'char'
    1241 | text = Calloc(strlen(fun)+strlen(arg)+5,char);
    | ^~~~
    mod_R.c:1244:4: error: implicit declaration of function 'Free'; did you mean 'free'? [-Wimplicit-function-declaration]
    1244 | Free(text);
    | ^~~~
    | free
    mod_R.c: In function 'PrepareHandlerExpr':
    mod_R.c:1310:36: error: expected expression before 'char'
    1310 | strlen(r->filename),char);
    | ^~~~
    mod_R.c:1315:36: error: expected expression before 'char'
    1315 | strlen(r->filename),char);
    | ^~~~
    mod_R.c:1331:101: error: expected expression before 'char'
    1331 | text = Calloc(strlen(fmt2)+strlen(h->directive->package)+strlen(h->directive->function),char);
    | ^~~~
    mod_R.c:1338:71: error: expected expression before 'char'
    1338 | text = Calloc(strlen(fmt1)+strlen(h->directive->function),char);
    | ^~~~
    mod_R.c: In function 'RApache_receiveBin':
    mod_R.c:2418:25: error: expected expression before 'unsigned'
    2418 | buf = Calloc(size,unsigned char);
    | ^~~~~~~~
    mod_R.c:2428:25: error: expected expression before 'unsigned'
    2428 | buf = Calloc(size,unsigned char);
    | ^~~~~~~~
    mod_R.c:2439:19: error: implicit declaration of function 'Realloc'; did you mean 'realloc'? [-Wimplicit-function-declaration]
    2439 | buf = Realloc(buf,size,unsigned char);
    | ^~~~~~~
    | realloc
    mod_R.c:2439:36: error: expected expression before 'unsigned'
    2439 | buf = Realloc(buf,size,unsigned char);
    | ^~~~~~~~
    apxs:Error: Command failed with rc=65536
    .
    make[1]: *** [Makefile:445: mod_R.so] Error 1
    make[1]: Leaving directory '/<<PKGBUILDDIR>>'
    dh_auto_build: error: make -j2 returned exit code 2
    make: *** [debian/rules:19: binary] Error 25
    dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 --------------------------------------------------------------------------------

    The above is just how the build ends and not necessarily the most relevant part.
    If required, the full build log is available here:

    https://people.debian.org/~sanvila/build-logs/202504/

    About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages.

    If you could not reproduce the bug please contact me privately, as I
    am willing to provide ssh access to a virtual machine where the bug is
    fully reproducible.

    If this is really a bug in one of the build-depends, please use
    reassign and add an affects on src:rapache, so that this is still
    visible in the BTS web page for this package.

    Thanks.

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    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Andreas Tille@21:1/5 to All on Thu Apr 24 14:30:01 2025
    Control: tag -1 pending

    Hello,

    Bug #1103202 in rapache reported by you has been fixed in the
    Git repository and is awaiting an upload. You can see the commit
    message below and you can check the diff of the fix at:

    https://salsa.debian.org/r-pkg-team/rapache/-/commit/8a6c952076735670bb69995a01a01a7ce7563377

    ------------------------------------------------------------------------
    Stop using Calloc for R 4.5 compatibility. (Closes: #1103202) ------------------------------------------------------------------------

    (this message was generated automatically)
    --
    Greetings

    https://bugs.debian.org/1103202

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Debian Bug Tracking System@21:1/5 to All on Thu Apr 24 14:30:01 2025
    Processing control commands:

    tag -1 pending
    Bug #1103202 [src:rapache] rapache: FTBFS: mod_R.c:1241:11: error: implicit declaration of function 'Calloc'
    Ignoring request to alter tags of bug #1103202 to the same tags previously set

    --
    1103202: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103202
    Debian Bug Tracking System
    Contact owner@bugs.debian.org with problems

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Debian Bug Tracking System@21:1/5 to All on Thu Apr 24 15:00:01 2025
    This is a multi-part message in MIME format...

    Your message dated Thu, 24 Apr 2025 12:49:59 +0000
    with message-id <E1u7w1f-00Hafo-V3@fasolo.debian.org>
    and subject line Bug#1103202: fixed in rapache 1.2.10-3
    has caused the Debian Bug report #1103202,
    regarding rapache: FTBFS: mod_R.c:1241:11: error: implicit declaration of function 'Calloc'
    to be marked as done.

    This means that you claim that the problem has been dealt with.
    If this is not the case it is now your responsibility to reopen the
    Bug report if necessary, and/or fix the problem forthwith.

    (NB: If you are a system administrator and have no idea what this
    message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org
    immediately.)


    --
    1103202: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103202
    Debian Bug Tracking System
    Contact owner@bugs.debian.org with problems

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