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  • Processed: update R bugs status

    From Debian Bug Tracking System@21:1/5 to All on Thu Apr 24 09:50:01 2025
    Processing commands for control@bugs.debian.org:

    # C23 became the default in R 4.5
    severity 1097762 serious
    Bug #1097762 [src:r-bioc-cner] r-bioc-cner: ftbfs with GCC-15
    Severity set to 'serious' from 'important'
    merge 1103198 1097762
    Bug #1103198 [src:r-bioc-cner] r-bioc-cner: FTBFS: ucsc/common.c:360:9: error: too many arguments to function 'free'
    Bug #1103198 [src:r-bioc-cner] r-bioc-cner: FTBFS: ucsc/common.c:360:9: error: too many arguments to function 'free'
    Added tag(s) forky.
    Bug #1097762 [src:r-bioc-cner] r-bioc-cner: ftbfs with GCC-15
    Added tag(s) ftbfs and trixie.
    Merged 1097762 1103198
    severity 1097764 serious
    Bug #1097764 [src:r-bioc-grohmm] r-bioc-grohmm: ftbfs with GCC-15
    Severity set to 'serious' from 'important'
    merge 1103227 1097764
    Bug #1103227 [src:r-bioc-grohmm] r-bioc-grohmm: FTBFS: DecayAlgorithm.c:94:15: error: expected identifier or '(' before 'false'
    Bug #1097764 [src:r-bioc-grohmm] r-bioc-grohmm: ftbfs with GCC-15
    Added tag(s) pending, trixie, and ftbfs.
    Bug #1103227 [src:r-bioc-grohmm] r-bioc-grohmm: FTBFS: DecayAlgorithm.c:94:15: error: expected identifier or '(' before 'false'
    Added tag(s) forky.
    Merged 1097764 1103227
    severity 1097765 serious
    Bug #1097765 [src:r-bioc-rtracklayer] r-bioc-rtracklayer: ftbfs with GCC-15 Severity set to 'serious' from 'important'
    merge 1103200 1097765
    Bug #1103200 [src:r-bioc-rtracklayer] r-bioc-rtracklayer: FTBFS: ucsc/common.c:249:9: error: too many arguments to function 'free'
    Bug #1103200 [src:r-bioc-rtracklayer] r-bioc-rtracklayer: FTBFS: ucsc/common.c:249:9: error: too many arguments to function 'free'
    Added tag(s) forky.
    Bug #1097765 [src:r-bioc-rtracklayer] r-bioc-rtracklayer: ftbfs with GCC-15 Added tag(s) trixie, pending, and ftbfs.
    Merged 1097765 1103200
    # fixed in Salsa
    tags 1103198 patch pending
    Bug #1103198 [src:r-bioc-cner] r-bioc-cner: FTBFS: ucsc/common.c:360:9: error: too many arguments to function 'free'
    Bug #1097762 [src:r-bioc-cner] r-bioc-cner: ftbfs with GCC-15
    Added tag(s) patch and pending.
    Added tag(s) patch and pending.
    tags 1103217 patch pending
    Bug #1103217 [src:r-bioc-affxparser] r-bioc-affxparser: FTBFS: R_affx_cel_parser.cpp:37:33: error: expected primary-expression before 'char'
    Added tag(s) patch and pending.
    tags 1102956 patch pending
    Bug #1102956 [src:r-cran-sparr] r-cran-sparr: FTBFS in testing: make: *** [debian/rules:4: binary] Error 25
    Added tag(s) pending and patch.
    tags 1103202 patch pending
    Bug #1103202 [src:rapache] rapache: FTBFS: mod_R.c:1241:11: error: implicit declaration of function 'Calloc'
    Added tag(s) patch and pending.
    tags 1103199 patch pending
    Bug #1103199 [src:r-bioc-oligo] r-bioc-oligo: FTBFS: ParserGzXYS.c:62:11: error: implicit declaration of function 'Calloc'; did you mean 'calloc'? [-Wimplicit-function-declaration]
    Added tag(s) patch and pending.
    tags 1103228 patch pending
    Bug #1103228 [src:r-cran-sdmtools] r-cran-sdmtools: FTBFS: pointinpolygon.c:11:20: error: 'PI' undeclared here (not in a function)
    Added tag(s) patch and pending.

    End of message, stopping processing here.

    Please contact me if you need assistance.
    --
    1097762: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097762
    1097764: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097764
    1097765: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097765
    1102956: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1102956
    1103198: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103198
    1103199: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103199
    1103200: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103200
    1103202: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103202
    1103217: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103217
    1103227: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103227
    1103228: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1103228
    Debian Bug Tracking System
    Contact owner@bugs.debian.org with problems

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