Hi all,
let's be realistic, the r-cran-* packages team-maintained by me and
others are not in a good shape. And given their complex net of cross-dependencies, there is the risk of removing a large number of them
from Trixie before the release.
When I check the UDD maintainer dasboard to set my priorities, I am
distracted by issues related to the i386 and s390x platforms. For the
first, I am not convinced that we have users that need us to ship
r-cran-* packages in Trixie. For s390x, well, the popcon score is just
10…
I do not believe that we will be able to fix everything on time, and I
want to move the less important issues out of the way. We have a script (routine-update) that clones the source package repo from Salsa, updates debian/control, builds the package, prepares a source-only upload and a
command to push the changes to Salsa. It has a --64 option that injects architecture-is-64-bit in the build depends and I will add a
--little-endian one that will inject architecture-is-little-endian.
After uploading the changes, I will then ask the FTP team to remove the team-maintained r-cran-* packages and all their reverse-dependencies
from the excluded architectures. I have added a DD list that tries to
predict the potentially affected packages. Please note that there are
false positives, as I generated it with dak rm -Rn r-base for
simplicity, but I am not proposing to touch r-base or the r-cran
packages managed by Dirk. The vast majority of the affected
dependencies are maintained by the Debian Med and Debian Science lists,
which I have CCed.
If you need one of the team-maintained r-cran-* packages on a 32-bit or
on a big endian architectures, which are not supported upstream, please
contact me on the debian-r list and let's see how we can share the
workload. Otherwise I will start the process next week, assuming silent approval. The alternative is to lose a lot of r-cran-* packages from
amd64 as well.
Have a nice day,
Charles
--
Charles Plessy Nagahama, Yomitan, Okinawa, Japan
Debian Med packaging team
http://www.debian.org/devel/debian-med Tooting from work,
https://fediscience.org/@charles_plessy Tooting from home,
https://framapiaf.org/@charles_plessy
Alba Crespi <
crespialba+debian@gmail.com>
r-cran-data.table (U)
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Andreas Tille <
tille@debian.org>
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r-cran-qlcmatrix (U)
r-cran-qpdf (U)
r-cran-qqconf (U)
r-cran-qtl (U)
r-cran-quickjsr (U)
r-cran-qvcalc (U)
r-cran-r.methodss3 (U)
r-cran-r.oo (U)
r-cran-r.utils (U)
r-cran-randomforest (U)
r-cran-rappdirs (U)
r-cran-raster (U)
r-cran-ratelimitr (U)
r-cran-rbibutils (U)
r-cran-rcarb (U)
r-cran-rcdk (U)
r-cran-rcdklibs (U)
r-cran-rcppannoy (U)
r-cran-rcppml (U)
r-cran-rcppmlpack (U)
r-cran-rcppparallel (U)
r-cran-rcppprogress (U)
r-cran-rcpproll (U)
r-cran-rcpptoml (U)
r-cran-rcurl (U)
r-cran-rdflib (U)
r-cran-rdpack (U)
r-cran-recipes (U)
r-cran-redland (U)
r-cran-regsem (U)
r-cran-relsurv (U)
r-cran-rentrez (U)
r-cran-renv (U)
r-cran-reshape (U)
r-cran-reshape2 (U)
r-cran-restfulr (U)
r-cran-rex (U)
r-cran-rgenoud (U)
r-cran-rglwidget (U)
r-cran-rgooglemaps (U)
r-cran-rhandsontable (U)
r-cran-rhpcblasctl (U)
r-cran-riskregression (U)
r-cran-ritis (U)
r-cran-rlang (U)
r-cran-rle (U)
r-cran-rlist (U)
r-cran-rlrsim (U)
r-cran-rlumshiny (U)
r-cran-rmarkdown (U)
r-cran-rmutil (U)
r-cran-rnaturalearth (U)
r-cran-rnaturalearthdata (U)
r-cran-rncl (U)
r-cran-rnexml (U)
r-cran-robumeta (U)
r-cran-rockchalk (U)
r-cran-rocr (U)
r-cran-rose (U)
r-cran-rotl (U)
r-cran-roxygen2 (U)
r-cran-rpact (U)
r-cran-rpf (U)
r-cran-rprojroot (U)
r-cran-rredlist (U)
r-cran-rsample (U)
r-cran-rsconnect (U)
r-cran-rsolnp (U)
r-cran-rspectra (U)
r-cran-rsqlite (U)
r-cran-rstan (U)
r-cran-rstanarm (U)
r-cran-rstantools (U)
r-cran-rsvg (U)
r-cran-rtdists (U)
r-cran-rtsne (U)
r-cran-rtweet (U)
r-cran-rversions (U)
r-cran-rwave (U)
r-cran-rwiener (U)
r-cran-s2 (U)
r-cran-sampling (U)
r-cran-samr (U)
r-cran-sass (U)
r-cran-satellite (U)
r-cran-scatterd3 (U)
r-cran-scattermore (U)
r-cran-segmented (U)
r-cran-semplot (U)
r-cran-sendmailr (U)
r-cran-seqinr (U)
r-cran-seriation (U)
r-cran-seroincidence (U)
r-cran-setrng (U)
r-cran-seuratobject (U)
r-cran-sf (U)
r-cran-sfsmisc (U)
r-cran-sftime (U)
r-cran-shape (U)
r-cran-shiny (U)
r-cran-shinybs (U)
r-cran-shinycssloaders (U)
r-cran-shinydashboard (U)
r-cran-shinyfiles (U)
r-cran-shinystan (U)
r-cran-shinythemes (U)
r-cran-sitmo (U)
r-cran-sjlabelled (U)
r-cran-sjmisc (U)
r-cran-sjplot (U)
r-cran-sjstats (U)
r-cran-slider (U)
r-cran-smcfcs (U)
r-cran-smoother (U)
r-cran-snakecase (U)
r-cran-snowballc (U)
r-cran-snowfall (U)
r-cran-sodium (U)
r-cran-solrium (U)
r-cran-sourcetools (U)
r-cran-sp (U)
r-cran-spacetime (U)
r-cran-spam (U)
r-cran-sparr (U)
r-cran-sparsesvd (U)
r-cran-spatialreg (U)
r-cran-spatstat (U)
r-cran-spatstat.data (U)
r-cran-spatstat.explore (U)
r-cran-spatstat.geom (U)
r-cran-spatstat.linnet (U)
r-cran-spatstat.model (U)
r-cran-spatstat.random (U)
r-cran-spatstat.sparse (U)
r-cran-spatstat.utils (U)
r-cran-spc (U)
r-cran-spdata (U)
r-cran-spdep (U)
r-cran-spelling (U)
r-cran-splines2 (U)
r-cran-spp (U)
r-cran-squarem (U)
r-cran-stable (U)
r-cran-stanheaders (U)
r-cran-stars (U)
r-cran-startupmsg (U)
r-cran-statip (U)
r-cran-stringdist (U)
r-cran-stringi (U)
r-cran-stringr (U)
r-cran-surveillance (U)
r-cran-survey (U)
r-cran-survminer (U)
r-cran-survmisc (U)
r-cran-svglite (U)
r-cran-swagger (U)
r-cran-sys (U)
r-cran-systemfit (U)
r-cran-systemfonts (U)
r-cran-taxize (U)
r-cran-teachingdemos (U)
r-cran-tensor (U)
r-cran-tensora (U)
r-cran-terra (U)
r-cran-testit (U)
r-cran-testthat (U)
r-cran-textshaping (U)
r-cran-tfisher (U)
r-cran-tfmpvalue (U)
r-cran-tgp (U)
r-cran-thematic (U)
r-cran-themis (U)
r-cran-threejs (U)
r-cran-tibble (U)
r-cran-tidygraph (U)
r-cran-tidyr (U)
r-cran-tidyselect (U)
r-cran-tidytext (U)
r-cran-tikzdevice (U)
r-cran-timereg (U)
r-cran-tinytex (U)
r-cran-tm (U)
r-cran-tmb (U)
r-cran-tmvtnorm (U)
r-cran-tokenizers (U)
r-cran-transformr (U)
r-cran-treespace (U)
r-cran-triebeard (U)
r-cran-trimcluster (U)
r-cran-truncnorm (U)
r-cran-tsp (U)
r-cran-tweenr (U)
r-cran-ucminf (U)
r-cran-udunits2 (U)
r-cran-unbalanced (U)
r-cran-unitizer (U)
r-cran-units (U)
r-cran-urlchecker (U)
r-cran-urltools (U)
r-cran-uroot (U)
r-cran-utf8 (U)
r-cran-uwot (U)
r-cran-vcd (U)
r-cran-vcr (U)
r-cran-vctrs (U)
r-cran-vdiffr (U)
r-cran-vegan (U)
r-cran-vim (U)
r-cran-vioplot (U)
r-cran-vipor (U)
r-cran-waldo (U)
r-cran-warp (U)
r-cran-waveslim (U)
r-cran-wavethresh (U)
r-cran-webfakes (U)
r-cran-webmockr (U)
r-cran-webshot (U)
r-cran-webutils (U)
r-cran-whatif (U)
r-cran-whisker (U)
r-cran-whoami (U)
r-cran-wikidataqueryservicer (U)
r-cran-wikidatar (U)
r-cran-wikipedir (U)
r-cran-wikitaxa (U)
r-cran-withr (U)
r-cran-wk (U)
r-cran-wkutils (U)
r-cran-wordcloud (U)
r-cran-worrms (U)
r-cran-xfun (U)
r-cran-xml2 (U)
r-cran-xslt (U)
r-cran-xts (U)
r-cran-yulab.utils (U)
r-cran-zeallot (U)
r-other-amsmercury (U)
r-other-ascat (U)
r-other-chbutils (U)
r-other-curvefdp (U)
r-other-iwrlars (U)
r-other-mott-happy (U)
r-other-nitpick (U)
r-other-wasabi (U)
r-other-x4r (U)
ray (U)
rsem (U)
surankco (U)
transdecoder (U)
Andrius Merkys <
merkys@debian.org>
r-cran-cyclocomp (U)
r-cran-lintr (U)
r-cran-rlinsolve (U)
r-cran-xmlparsedata (U)
Anton Gladky <
gladk@debian.org>
vtk9 (U)
Antoni Villalonga <
antoni@friki.cat>
vt (U)
Aurélien COUDERC <
coucouf@debian.org>
cantor (U)
Benjamin Eikel <
debian@eikel.org>
r-cran-ggplot2 (U)
r-cran-munsell (U)
r-cran-scales (U)
Carlos Borroto <
carlos.borroto@gmail.com>
r-cran-plyr (U)
Charles Plessy <
plessy@debian.org>
picard-tools (U)
r-bioc-genomeinfodb (U)
r-bioc-genomeinfodbdata (U)
r-bioc-genomicalignments (U)
r-bioc-hdf5array (U)
r-bioc-iranges (U)
r-bioc-matrixgenerics (U)
r-bioc-rtracklayer (U)
r-bioc-s4arrays (U)
r-bioc-s4vectors (U)
r-bioc-summarizedexperiment (U)
r-bioc-xvector (U)
r-bioc-zlibbioc (U)
r-cran-biocmanager (U)
r-cran-cftime (U)
r-cran-epitools (U)
r-cran-genetics (U)
r-cran-spacefillr (U)
r-cran-sparsevctrs (U)
r-cran-spatstat.univar (U)
Chris Lamb <
lamby@debian.org>
diffoscope (U)
Chris Lawrence <
lawrencc@debian.org>
r-cran-aer (U)
r-cran-amelia (U)
r-cran-bayesm (U)
r-cran-coda (U)
r-cran-gam (U)
r-cran-geepack (U)
r-cran-gmaps (U)
r-cran-jsonlite (U)
r-cran-mapdata (U)
r-cran-mapproj (U)
r-cran-maps (U)
r-cran-matchit (U)
r-cran-mcmc (U)
r-cran-mcmcpack (U)
r-cran-mnp (U)
r-cran-pscl (U)
r-cran-psy (U)
r-cran-rjags (U)
r-cran-vgam (U)
r-cran-zelig (U)
Christoph Berg <
myon@debian.org>
plr (U)
Christopher Hoskin <
christopher.hoskin@gmail.com>
r-bioc-rbgl (U)
Debian Emacsen team <
debian-emacsen@lists.debian.org>
ess
Debian KDE Extras Team <
pkg-kde-extras@lists.alioth.debian.org>
rkward
Debian Math Team <
team+math@tracker.debian.org>
macaulay2
sagemath
Debian Med Packaging Team <
debian-med-packaging@lists.alioth.debian.org>
assemblytics
bio-tradis
ea-utils
fastqtl
libsbml
libvcflib
mapdamage
paleomix
picard-tools
pique
python-pybedtools
q2-dada2
q2-diversity-lib
q2-quality-control
qcumber
qtltools
ray
reapr
roary
rsem
surankco
transdecoder
trinityrnaseq
vt
Debian Perl Group <
pkg-perl-maintainers@lists.alioth.debian.org>
libstatistics-r-perl
Debian PostgreSQL Maintainers <
team+postgresql@tracker.debian.org>
plr
Debian Python Team <
team+python@tracker.debian.org>
jupyter-kernel-test
Debian Qt/KDE Maintainers <
debian-qt-kde@lists.debian.org>
cantor
Debian R Packages Maintainers <
r-pkg-team@alioth-lists.debian.net>
dh-r
r-bioc-affxparser
r-bioc-affy
r-bioc-affyio
r-bioc-alabaster.base
r-bioc-alabaster.matrix
r-bioc-alabaster.ranges
r-bioc-alabaster.sce
r-bioc-alabaster.schemas
r-bioc-alabaster.se
r-bioc-all
r-bioc-altcdfenvs
r-bioc-annotate
r-bioc-annotationdbi
r-bioc-annotationfilter
r-bioc-annotationhub
r-bioc-aroma.light
r-bioc-arrayexpress
r-bioc-assorthead
r-bioc-ballgown
r-bioc-basilisk
r-bioc-basilisk.utils
r-bioc-beachmat
r-bioc-biobase
r-bioc-biocbaseutils
r-bioc-bioccheck
r-bioc-biocfilecache
r-bioc-biocgenerics
r-bioc-biocio
r-bioc-biocneighbors
r-bioc-biocparallel
r-bioc-biocsingular
r-bioc-biocstyle
r-bioc-biocversion
r-bioc-biocviews
r-bioc-biomart
r-bioc-biomformat
r-bioc-biostrings
r-bioc-biovizbase
r-bioc-bladderbatch
r-bioc-bluster
r-bioc-bsgenome
r-bioc-bsseq
r-bioc-chemminer
r-bioc-cner
r-bioc-complexheatmap
r-bioc-consensusclusterplus
r-bioc-ctc
r-bioc-cummerbund
r-bioc-dada2
r-bioc-decontam
r-bioc-decoupler
r-bioc-degnorm
r-bioc-degreport
r-bioc-delayedarray
r-bioc-delayedmatrixstats
r-bioc-demixt
r-bioc-densvis
r-bioc-deseq
r-bioc-deseq2
r-bioc-destiny
r-bioc-dexseq
r-bioc-dir.expiry
r-bioc-dirichletmultinomial
r-bioc-dnacopy
r-bioc-drimseq
r-bioc-dropletutils
r-bioc-dss
r-bioc-dupradar
r-bioc-ebseq
r-bioc-edaseq
r-bioc-edger
r-bioc-eir
r-bioc-ensembldb
r-bioc-experimenthub
r-bioc-fishpond
r-bioc-fmcsr
r-bioc-genefilter
r-bioc-genelendatabase
r-bioc-geneplotter
r-bioc-genomeinfodb
r-bioc-genomeinfodbdata
r-bioc-genomicalignments
r-bioc-genomicfeatures
r-bioc-genomicfiles
r-bioc-genomicranges
r-bioc-geoquery
r-bioc-ggbio
r-bioc-glmgampoi
r-bioc-go.db
r-bioc-golubesets
r-bioc-gosemsim
r-bioc-goseq
r-bioc-graph
r-bioc-grohmm
r-bioc-gseabase
r-bioc-gsva
r-bioc-gsvadata
r-bioc-gviz
r-bioc-gypsum
r-bioc-hdf5array
r-bioc-hgu95a.db
r-bioc-hilbertvis
r-bioc-hsmmsinglecell
r-bioc-htsfilter
r-bioc-hypergraph
r-bioc-ihw
r-bioc-impute
r-bioc-interactivedisplaybase
r-bioc-ioniser
r-bioc-iranges
r-bioc-isoformswitchanalyzer
r-bioc-keggrest
r-bioc-limma
r-bioc-lpsymphony
r-bioc-makecdfenv
r-bioc-matrixgenerics
r-bioc-megadepth
r-bioc-mergeomics
r-bioc-metagenomeseq
r-bioc-metapod
r-bioc-mofa
r-bioc-mofa2
r-bioc-monocle
r-bioc-multiassayexperiment
r-bioc-multtest
r-bioc-mutationalpatterns
r-bioc-netsam
r-bioc-noiseq
r-bioc-oligo
r-bioc-oligoclasses
r-bioc-org.hs.eg.db
r-bioc-organismdbi
r-bioc-pcamethods
r-bioc-pfamanalyzer
r-bioc-phyloseq
r-bioc-preprocesscore
r-bioc-progeny
r-bioc-protgenerics
r-bioc-purecn
r-bioc-pwalign
r-bioc-pwmenrich
r-bioc-qtlizer
r-bioc-qusage
r-bioc-qvalue
r-bioc-rbgl
r-bioc-rcpi
r-bioc-rcwl
r-bioc-residualmatrix
r-bioc-rgsepd
r-bioc-rhdf5
r-bioc-rhdf5filters
r-bioc-rhdf5lib
r-bioc-rhtslib
r-bioc-rots
r-bioc-rsamtools
r-bioc-rsubread
r-bioc-rtracklayer
r-bioc-rwikipathways
r-bioc-s4arrays
r-bioc-s4vectors
r-bioc-saturn
r-bioc-savr
r-bioc-scaledmatrix
r-bioc-scater
r-bioc-scran
r-bioc-scrnaseq
r-bioc-scuttle
r-bioc-seqlogo
r-bioc-shortread
r-bioc-singlecellexperiment
r-bioc-singler
r-bioc-snpstats
r-bioc-sparsearray
r-bioc-sparsematrixstats
r-bioc-spatialexperiment
r-bioc-stringdb
r-bioc-structuralvariantannotation
r-bioc-summarizedexperiment
r-bioc-sva
r-bioc-tcgabiolinks
r-bioc-tcgabiolinksgui.data
r-bioc-tfbstools
r-bioc-titancna
r-bioc-txdbmaker
r-bioc-tximeta
r-bioc-tximport
r-bioc-tximportdata
r-bioc-ucsc.utils
r-bioc-variantannotation
r-bioc-wrench
r-bioc-xvector
r-bioc-zlibbioc
r-cran-actuar
r-cran-ade4
r-cran-adegenet
r-cran-adegraphics
r-cran-adephylo
r-cran-admisc
r-cran-aer
r-cran-afex
r-cran-airr
r-cran-alakazam
r-cran-amap
r-cran-amelia
r-cran-amore
r-cran-animation
r-cran-apcluster
r-cran-ape
r-cran-aplpack
r-cran-areal
r-cran-argparse
r-cran-argparser
r-cran-arm
r-cran-arsenal
r-cran-askpass
r-cran-assertive.base
r-cran-assertthat
r-cran-av
r-cran-aweek
r-cran-backports
r-cran-base64enc
r-cran-base64url
r-cran-batchjobs
r-cran-batchtools
r-cran-bayesfactor
r-cran-bayesfm
r-cran-bayesm
r-cran-bayesplot
r-cran-bayestestr
r-cran-bbmisc
r-cran-bbmle
r-cran-bdgraph
r-cran-bdsmatrix
r-cran-beeswarm
r-cran-bench
r-cran-benchmarkme
r-cran-benchmarkmedata
r-cran-biasedurn
r-cran-bibtex
r-cran-bigmemory
r-cran-bigmemory.sri
r-cran-bindr
r-cran-bindrcpp
r-cran-bio3d
r-cran-biocmanager
r-cran-bios2cor
r-cran-bit
r-cran-bit64
r-cran-bitops
r-cran-biwt
r-cran-blme
r-cran-blob
r-cran-blockmodeling
r-cran-bms
r-cran-bold
r-cran-bookdown
r-cran-boolnet
r-cran-bradleyterry2
r-cran-brew
r-cran-brglm
r-cran-brglm2
r-cran-bridgesampling
r-cran-brio
r-cran-brms
r-cran-brobdingnag
r-cran-broom
r-cran-broom.helpers
r-cran-broom.mixed
r-cran-bslib
r-cran-ca
r-cran-cachem
r-cran-caic4
r-cran-cairo
r-cran-calibrate
r-cran-calibratr
r-cran-callr
r-cran-cards
r-cran-caret
r-cran-catools
r-cran-cba
r-cran-cftime
r-cran-checkmate
r-cran-chk
r-cran-circlize
r-cran-circular
r-cran-classint
r-cran-cli
r-cran-cliapp
r-cran-clipr
r-cran-clisymbols
r-cran-clock
r-cran-clubsandwich
r-cran-clue
r-cran-clustergeneration
r-cran-cmdfun
r-cran-cmprsk
r-cran-cmstatr
r-cran-coarsedatatools
r-cran-coda
r-cran-coin
r-cran-collapse
r-cran-colorspace
r-cran-colourpicker
r-cran-combinat
r-cran-commonmark
r-cran-conditionz
r-cran-conflicted
r-cran-contfrac
r-cran-corpcor
r-cran-corrplot
r-cran-covid19us
r-cran-covr
r-cran-cowplot
r-cran-cpp11
r-cran-crayon
r-cran-credentials
r-cran-crosstalk
r-cran-crul
r-cran-ctmcd
r-cran-cubelyr
r-cran-curl
r-cran-cutpointr
r-cran-cvst
r-cran-cyclocomp
r-cran-d3network
r-cran-data.table
r-cran-datawizard
r-cran-dbitest
r-cran-dbplyr
r-cran-dbscan
r-cran-ddalpha
r-cran-ddrtree
r-cran-deal
r-cran-decor
r-cran-deldir
r-cran-dendextend
r-cran-dendsort
r-cran-densityclust
r-cran-deoptim
r-cran-desc
r-cran-desolve
r-cran-devtools
r-cran-dfoptim
r-cran-dharma
r-cran-diagnosismed
r-cran-diagram
r-cran-diagrammer
r-cran-dials
r-cran-dicedesign
r-cran-dichromat
r-cran-diffobj
r-cran-dimred
r-cran-diptest
r-cran-dirmult
r-cran-discriminer
r-cran-distory
r-cran-distr
r-cran-distributional
r-cran-docopt
r-cran-doparallel
r-cran-dorng
r-cran-dosefinding
r-cran-dotcall64
r-cran-downlit
r-cran-downloader
r-cran-dplyr
r-cran-dqrng
r-cran-drr
r-cran-dslabs
r-cran-dt
r-cran-dtplyr
r-cran-dygraphs
r-cran-dynamictreecut
r-cran-dynlm
r-cran-eaf
r-cran-earth
r-cran-ecosolver
r-cran-effectsize
r-cran-egg
r-cran-ei
r-cran-eipack
r-cran-ellipse
r-cran-elliptic
r-cran-emayili
r-cran-emdbook
r-cran-emmeans
r-cran-emoa
r-cran-enrichwith
r-cran-epi
r-cran-epibasix
r-cran-epicalc
r-cran-epiestim
r-cran-epir
r-cran-epitools
r-cran-erm
r-cran-estimability
r-cran-estimatr
r-cran-etm
r-cran-evaluate
r-cran-evd
r-cran-exactextractr
r-cran-exactranktests
r-cran-expint
r-cran-expm
r-cran-extradistr
r-cran-factoextra
r-cran-factominer
r-cran-fadist
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