• origin of biological chirality?

    From Ernest Major@21:1/5 to All on Sun Aug 18 00:08:49 2024
    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane
    models inspired by the membranes of modern organisms, so is not directly relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    --
    alias Ernest Major

    --- SoupGate-Win32 v1.05
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  • From Bob Casanova@21:1/5 to All on Sun Aug 18 10:01:35 2024
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane >models inspired by the membranes of modern organisms, so is not directly >relevant to abiogenesis. However it still raises the possibility that >membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Bob Casanova@21:1/5 to All on Sun Aug 18 15:11:57 2024
    On Sun, 18 Aug 2024 13:37:19 -0500, the following appeared
    in talk.origins, posted by RonO <rokimoto557@gmail.com>:

    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane >>> models inspired by the membranes of modern organisms, so is not directly >>> relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf


    For chirality there is an equilibrium ratio between the mirror images.
    D sugars have been known to exist in solution at higher concentrations
    that L forms. My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter. The >chirality of life was set by the first enzymatic reactions used by life
    to get started. The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides. The active sites of the first
    replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be >compatible for the ones that came before. Only one form fits into the
    active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they >spontaneously change from D to L and if left to themselves you would get
    a mix at a certain ratio in solution. I really do not understand why
    anyone is worried about why life on earth uses D sugars and L amino
    acids. It would have been set, probably, by the enzymes of the first
    self replicators, and would have likely been maintained by selection as >everything would have worked better if new functions could use the same >materials.

    I found this paper that L amino acids would have been more efficiently >incorporated into our current translation system (making proteins using >ribosomes, mRNA and tRNAs) because both D and L amino acids transition >between the 2 and 3 position of the ribose (at the end of the tRNA)
    several times a second, but L forms are found more often at the 3
    position that is used in the translation system. It is a reason to use
    L amino acids to make proteins using our current translation system, but
    L amino acids would have been selected long before by their use in
    making nucleotides and other essential biochemicals for the lifeform
    before the translation system existed.

    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC281674/

    OK; thanks.

    So if I understand what you wrote, while there are
    similarities between chirality selection and m/am in the
    sense that both involve equally-likely (chemically) forms,
    the former involves, at least somewhat, preferential
    selection for incorporation into living things while the
    latter is (AFAIK) a matter of pure chance. Sound right?

    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

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  • From Pro Plyd@21:1/5 to RonO on Sun Aug 18 21:11:53 2024
    RonO wrote:
    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major

    For chirality there is an equilibrium ratio between the mirror images. D sugars have been known to exist in solution at higher concentrations
    that L forms.  My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter.  The chirality of life was set by the first enzymatic reactions used by life
    to get started.  The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides.  The active sites of the first replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be compatible for the ones that came before.  Only one form fits into the active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they spontaneously change from D to L and if left to themselves you would get
    a mix at a certain ratio in solution.
    Quite some time ago I came across (borrowed?) an old
    scifi Star Trek novel called "Spock Must Die". There's
    even a wiki page for it

    https://en.wikipedia.org/wiki/Spock_Must_Die!

    Anyways, that bad ol transporter makes a second
    Spock. This second Spock was the chiral opposite
    of the original Spock and was basically starving
    because the food had the wrong chirality. Cool
    stuff for 1970. Moral of the story is that the
    chirality preference is universal!

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Bob Casanova@21:1/5 to All on Sun Aug 18 21:48:07 2024
    On Sun, 18 Aug 2024 21:11:53 -0600, the following appeared
    in talk.origins, posted by Pro Plyd
    <invalide@invalid.invalid>:

    RonO wrote:
    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major

    For chirality there is an equilibrium ratio between the mirror images. D
    sugars have been known to exist in solution at higher concentrations
    that L forms.  My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter.  The
    chirality of life was set by the first enzymatic reactions used by life
    to get started.  The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides.  The active sites of the first
    replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be
    compatible for the ones that came before.  Only one form fits into the
    active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they
    spontaneously change from D to L and if left to themselves you would get
    a mix at a certain ratio in solution.
    Quite some time ago I came across (borrowed?) an old
    scifi Star Trek novel called "Spock Must Die". There's
    even a wiki page for it

    https://en.wikipedia.org/wiki/Spock_Must_Die!

    Anyways, that bad ol transporter makes a second
    Spock. This second Spock was the chiral opposite
    of the original Spock and was basically starving
    because the food had the wrong chirality. Cool
    stuff for 1970. Moral of the story is that the
    chirality preference is universal!

    Check out the Roger Zelazny novel, "Doorways in the Sand".


    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Stewart Robert Hinsley@21:1/5 to Pro Plyd on Mon Aug 19 08:13:30 2024
    On 19/08/2024 04:11, Pro Plyd wrote:
    RonO wrote:
    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major

    For chirality there is an equilibrium ratio between the mirror images.
    D sugars have been known to exist in solution at higher concentrations
    that L forms.  My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter.
    The chirality of life was set by the first enzymatic reactions used by
    life to get started.  The use of L amino acids would have been set by
    the first functional proteases that could produce peptide bonds or for
    the RNA world scenario it would have been L amino acids that were
    probably used to make the first nucleotides.  The active sites of the
    first replicated enzymes would have set the chirality, and that
    chirality would have been maintained due to subsequent enzymes would
    have to be compatible for the ones that came before.  Only one form
    fits into the active site of an enzyme that uses that amino acid or
    carbohydrate. Enzymes have evolved to convert one form into the other
    because they spontaneously change from D to L and if left to
    themselves you would get a mix at a certain ratio in solution.
    Quite some time ago I came across (borrowed?) an old
    scifi Star Trek novel called "Spock Must Die". There's
    even a wiki page for it

    https://en.wikipedia.org/wiki/Spock_Must_Die!

    Anyways, that bad ol transporter makes a second
    Spock. This second Spock was the chiral opposite
    of the original Spock and was basically starving
    because the food had the wrong chirality. Cool
    stuff for 1970. Moral of the story is that the
    chirality preference is universal!


    That is probably based on Arthur C. Clarke's 1950 short story "Technical
    Error" (originally published as "The Reversed Man"). (There is also,
    judging by descriptions, a more tongue in cheek 1987 story by Isaac
    Asimov - "Left to Right".)

    https://en.wikipedia.org/wiki/Technical_Error

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Athel Cornish-Bowden@21:1/5 to RonO on Mon Aug 19 11:07:26 2024
    On 2024-08-18 18:37:19 +0000, RonO said:

    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane >>> models inspired by the membranes of modern organisms, so is not directly >>> relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf


    For chirality there is an equilibrium ratio between the mirror images.
    D sugars have been known to exist in solution at higher concentrations
    that L forms. My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter. The chirality of life was set by the first enzymatic reactions used by life
    to get started. The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides. The active sites of the first
    replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be compatible for the ones that came before. Only one form fits into the
    active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they spontaneously change from D to L and if left to themselves you would
    get a mix at a certain ratio in solution. I really do not understand
    why anyone is worried about why life on earth uses D sugars and L amino acids.

    Me neither. It had to be one or the other, and with appropriate enzymes
    D aminoacids would have been just as good, but having made the choice
    life had to stick with it.

    An interesting case is that of lactate. Both D-lactate and L-lactate
    are important metabolites, and the lactate dehydrogenases that act on
    them are quite different from one another.

    It would have been set, probably, by the enzymes of the first self replicators, and would have likely been maintained by selection as
    everything would have worked better if new functions could use the same materials.

    I found this paper that L amino acids would have been more efficiently incorporated into our current translation system (making proteins using ribosomes, mRNA and tRNAs) because both D and L amino acids transition between the 2 and 3 position of the ribose (at the end of the tRNA)
    several times a second, but L forms are found more often at the 3
    position that is used in the translation system. It is a reason to use
    L amino acids to make proteins using our current translation system,
    but L amino acids would have been selected long before by their use in
    making nucleotides and other essential biochemicals for the lifeform
    before the translation system existed.

    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC281674/

    Ron Okimoto


    --
    Athel -- French and British, living in Marseilles for 37 years; mainly
    in England until 1987.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Athel Cornish-Bowden@21:1/5 to Stewart Robert Hinsley on Mon Aug 19 11:11:23 2024
    On 2024-08-19 07:13:30 +0000, Stewart Robert Hinsley said:

    On 19/08/2024 04:11, Pro Plyd wrote:
    RonO wrote:
    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major

    For chirality there is an equilibrium ratio between the mirror images.
    D sugars have been known to exist in solution at higher concentrations
    that L forms.  My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter. The
    chirality of life was set by the first enzymatic reactions used by life
    to get started.  The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides.  The active sites of the first
    replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be
    compatible for the ones that came before.  Only one form fits into the
    active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they
    spontaneously change from D to L and if left to themselves you would
    get a mix at a certain ratio in solution.
    Quite some time ago I came across (borrowed?) an old
    scifi Star Trek novel called "Spock Must Die". There's
    even a wiki page for it

    https://en.wikipedia.org/wiki/Spock_Must_Die!

    Anyways, that bad ol transporter makes a second
    Spock. This second Spock was the chiral opposite
    of the original Spock and was basically starving
    because the food had the wrong chirality. Cool
    stuff for 1970. Moral of the story is that the
    chirality preference is universal!


    That is probably based on Arthur C. Clarke's 1950 short story
    "Technical Error" (originally published as "The Reversed Man"). (There
    is also, judging by descriptions, a more tongue in cheek 1987 story by
    Isaac Asimov - "Left to Right".)

    Remember that Asimov was a biochemist (not a very significant one, but
    that's another matter), whereas these other authors were not.

    https://en.wikipedia.org/wiki/Technical_Error


    --
    Athel -- French and British, living in Marseilles for 37 years; mainly
    in England until 1987.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Athel Cornish-Bowden@21:1/5 to RonO on Mon Aug 19 19:31:29 2024
    On 2024-08-19 14:01:55 +0000, RonO said:

    On 8/19/2024 4:07 AM, Athel Cornish-Bowden wrote:
    On 2024-08-18 18:37:19 +0000, RonO said:

    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>>>> one or the other sugar or amino acid enantiomer. The study used membrane >>>>> models inspired by the membranes of modern organisms, so is not directly >>>>> relevant to abiogenesis. However it still raises the possibility that >>>>> membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf >>>>>

    For chirality there is an equilibrium ratio between the mirror images.
    D sugars have been known to exist in solution at higher concentrations
    that L forms.  My guess is that L forms of amino acids are likely to
    exist at higher concentrations in solution, but it doesn't matter. The
    chirality of life was set by the first enzymatic reactions used by life
    to get started.  The use of L amino acids would have been set by the
    first functional proteases that could produce peptide bonds or for the
    RNA world scenario it would have been L amino acids that were probably
    used to make the first nucleotides.  The active sites of the first
    replicated enzymes would have set the chirality, and that chirality
    would have been maintained due to subsequent enzymes would have to be
    compatible for the ones that came before.  Only one form fits into the
    active site of an enzyme that uses that amino acid or carbohydrate.
    Enzymes have evolved to convert one form into the other because they
    spontaneously change from D to L and if left to themselves you would
    get a mix at a certain ratio in solution.  I really do not understand
    why anyone is worried about why life on earth uses D sugars and L amino
    acids.

    Me neither. It had to be one or the other, and with appropriate enzymes
    D aminoacids would have been just as good, but having made the choice
    life had to stick with it.

    An interesting case is that of lactate. Both D-lactate and L-lactate
    are important metabolites, and the lactate dehydrogenases that act on
    them are quite different from one another.

    As I indicated these carbon molecules transition between forms in
    solution. For some important amino acids cells have enzymes that
    convert D amino acids to the L form. For lactate it probably became important to deal with the terminal product of glycolysis, so instead
    of evolving a system to keep changing one to the other, enzymes evolved
    to deal with both D and L forms so that the amount of lactate could be regulated more efficiently.

    Yes, but there aren't many examples of reactions that convert achiral substrates into chiral products (or vice versa). Come to that, apart
    from pyruvate there aren't many important achiral metabolites.

      It would have been set, probably, by the enzymes of the first self
    replicators, and would have likely been maintained by selection as
    everything would have worked better if new functions could use the same
    materials.

    I found this paper that L amino acids would have been more efficiently
    incorporated into our current translation system (making proteins using
    ribosomes, mRNA and tRNAs) because both D and L amino acids transition
    between the 2 and 3 position of the ribose (at the end of the tRNA)
    several times a second, but L forms are found more often at the 3
    position that is used in the translation system.  It is a reason to use
    L amino acids to make proteins using our current translation system,
    but L amino acids would have been selected long before by their use in
    making nucleotides and other essential biochemicals for the lifeform
    before the translation system existed.

    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC281674/

    Ron Okimoto


    --
    Athel -- French and British, living in Marseilles for 37 years; mainly
    in England until 1987.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From J. J. Lodder@21:1/5 to Bob Casanova on Thu Aug 22 09:16:04 2024
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane >models inspired by the membranes of modern organisms, so is not directly >relevant to abiogenesis. However it still raises the possibility that >membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed
    ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.

    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Jan

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  • From Bob Casanova@21:1/5 to All on Thu Aug 22 07:02:00 2024
    On Thu, 22 Aug 2024 09:16:04 +0200, the following appeared
    in talk.origins, posted by nospam@de-ster.demon.nl (J. J.
    Lodder):

    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane
    models inspired by the membranes of modern organisms, so is not directly
    relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed
    ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.

    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    OK, I get that. I was only commenting on the prevalence of
    one form when neither seemed to be inherently preferred. Ron
    corrected me on that; that there apparently *is* a preferred
    chirality, at least as to biology.

    I seem to remember reading, decades ago, that at least some
    of the then-current thinking on the matter/antimatter
    imbalance that there was once only a small imbalance, but
    that mutual annihilation removed almost all of both, leaving
    the current deficit of antimatter. Is that still the case?

    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Pro Plyd@21:1/5 to J. J. Lodder on Fri Aug 23 22:34:00 2024
    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to
    one or the other sugar or amino acid enantiomer. The study used membrane >>> models inspired by the membranes of modern organisms, so is not directly >>> relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed
    ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.

    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Pro Plyd@21:1/5 to Bob Casanova on Fri Aug 23 22:20:08 2024
    Bob Casanova wrote:
    On Sun, 18 Aug 2024 21:11:53 -0600, the following appeared
    in talk.origins, posted by Pro Plyd
    <invalide@invalid.invalid>:

    RonO wrote:
    On 8/18/2024 12:01 PM, Bob Casanova wrote:
    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major

    stuff for 1970. Moral of the story is that the
    chirality preference is universal!

    Check out the Roger Zelazny novel, "Doorways in the Sand".

    Pretty sure I've read that once upon a time
    but don't recall much of it. Had to google it.
    Will have to put this on my list of things to
    revisit.

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Ernest Major@21:1/5 to Pro Plyd on Sat Aug 24 10:34:20 2024
    On 24/08/2024 05:34, Pro Plyd wrote:
    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>>> one or the other sugar or amino acid enantiomer. The study used
    membrane
    models inspired by the membranes of modern organisms, so is not
    directly
    relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed
    ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.
    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    Charge conservation is a consequence of "the global gauge invariance of
    the electromagnetic field". From the existence of beta decay it can be
    deduced that the charges on the proton and positron are the same (unless
    you're willing to postulate that neutrinos are charged). From the
    existence of electron-positron annihilation it can be deduced that the
    charges on the electron and positron are equal in magnitude (unless
    you're willing to postulate that photons are charged). From this we can conclude that the charges on protons and electrons balance each other out.

    So we are left to rephrase the question as "why are there equal numbers
    of protons and electrons?" (Other charged particles decay to protons and electrons (and photons and neutrinos) reasonably quickly.

    --
    alias Ernest Major

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Bob Casanova@21:1/5 to All on Sat Aug 24 10:08:26 2024
    On Sat, 24 Aug 2024 10:34:20 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    On 24/08/2024 05:34, Pro Plyd wrote:
    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>>>> one or the other sugar or amino acid enantiomer. The study used
    membrane
    models inspired by the membranes of modern organisms, so is not
    directly
    relevant to abiogenesis. However it still raises the possibility that >>>>> membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed
    ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.
    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    Charge conservation is a consequence of "the global gauge invariance of
    the electromagnetic field". From the existence of beta decay it can be >deduced that the charges on the proton and positron are the same (unless >you're willing to postulate that neutrinos are charged). From the
    existence of electron-positron annihilation it can be deduced that the >charges on the electron and positron are equal in magnitude (unless
    you're willing to postulate that photons are charged). From this we can >conclude that the charges on protons and electrons balance each other out.

    So we are left to rephrase the question as "why are there equal numbers
    of protons and electrons?" (Other charged particles decay to protons and >electrons (and photons and neutrinos) reasonably quickly.

    This sounds to me like a close relative of the Anthropic
    Principle, in that a universe in which charge, rather than
    gravity, dominates would most likely be one in which life
    couldn't exist. IOW, "I am, therefore charges balance."

    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Ernest Major@21:1/5 to Bob Casanova on Sat Aug 24 19:23:00 2024
    On 24/08/2024 18:08, Bob Casanova wrote:
    On Sat, 24 Aug 2024 10:34:20 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    On 24/08/2024 05:34, Pro Plyd wrote:
    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>>>>> one or the other sugar or amino acid enantiomer. The study used
    membrane
    models inspired by the membranes of modern organisms, so is not
    directly
    relevant to abiogenesis. However it still raises the possibility that >>>>>> membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf >>>>
    It isn't. The left-handed molecules can be converted into right-handed >>>> ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.
    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    Charge conservation is a consequence of "the global gauge invariance of
    the electromagnetic field". From the existence of beta decay it can be
    deduced that the charges on the proton and positron are the same (unless
    you're willing to postulate that neutrinos are charged). From the
    existence of electron-positron annihilation it can be deduced that the
    charges on the electron and positron are equal in magnitude (unless
    you're willing to postulate that photons are charged). From this we can
    conclude that the charges on protons and electrons balance each other out. >>
    So we are left to rephrase the question as "why are there equal numbers
    of protons and electrons?" (Other charged particles decay to protons and
    electrons (and photons and neutrinos) reasonably quickly.

    This sounds to me like a close relative of the Anthropic
    Principle, in that a universe in which charge, rather than
    gravity, dominates would most likely be one in which life
    couldn't exist. IOW, "I am, therefore charges balance."


    In principle one could apply the Weak Anthropic Principle to place an
    upper bound on any charge imbalance. (This is not necessarily a tighter
    bound that can be obtained by more direct observations.)

    --
    alias Ernest Major

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From Bob Casanova@21:1/5 to All on Sun Aug 25 09:34:48 2024
    On Sat, 24 Aug 2024 19:23:00 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    On 24/08/2024 18:08, Bob Casanova wrote:
    On Sat, 24 Aug 2024 10:34:20 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    On 24/08/2024 05:34, Pro Plyd wrote:
    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>>>>>> one or the other sugar or amino acid enantiomer. The study used
    membrane
    models inspired by the membranes of modern organisms, so is not
    directly
    relevant to abiogenesis. However it still raises the possibility that >>>>>>> membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral >>>>>>> membrane lipids; if so it only move the question of the origin of >>>>>>> chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf >>>>>
    It isn't. The left-handed molecules can be converted into right-handed >>>>> ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.
    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    Charge conservation is a consequence of "the global gauge invariance of
    the electromagnetic field". From the existence of beta decay it can be
    deduced that the charges on the proton and positron are the same (unless >>> you're willing to postulate that neutrinos are charged). From the
    existence of electron-positron annihilation it can be deduced that the
    charges on the electron and positron are equal in magnitude (unless
    you're willing to postulate that photons are charged). From this we can
    conclude that the charges on protons and electrons balance each other out. >>>
    So we are left to rephrase the question as "why are there equal numbers
    of protons and electrons?" (Other charged particles decay to protons and >>> electrons (and photons and neutrinos) reasonably quickly.

    This sounds to me like a close relative of the Anthropic
    Principle, in that a universe in which charge, rather than
    gravity, dominates would most likely be one in which life
    couldn't exist. IOW, "I am, therefore charges balance."


    In principle one could apply the Weak Anthropic Principle to place an
    upper bound on any charge imbalance. (This is not necessarily a tighter
    bound that can be obtained by more direct observations.)

    Point taken. Thanks.

    --

    Bob C.

    "The most exciting phrase to hear in science,
    the one that heralds new discoveries, is not
    'Eureka!' but 'That's funny...'"

    - Isaac Asimov

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)
  • From J. J. Lodder@21:1/5 to Pro Plyd on Mon Aug 26 13:23:51 2024
    Pro Plyd <invalide@invalid.invalid> wrote:

    J. J. Lodder wrote:
    Bob Casanova <nospam@buzz.off> wrote:

    On Sun, 18 Aug 2024 00:08:49 +0100, the following appeared
    in talk.origins, posted by Ernest Major
    <{$to$}@meden.demon.co.uk>:

    A study has found that lipid membranes can be selectively permeable to >>> one or the other sugar or amino acid enantiomer. The study used membrane >>> models inspired by the membranes of modern organisms, so is not directly >>> relevant to abiogenesis. However it still raises the possibility that
    membrane selectivity was the source of chirality in biological
    molecules. One possible issue is does this effect require chiral
    membrane lipids; if so it only move the question of the origin of
    chirality from sugars and amino acids to lipids.

    ISTM that this is similar to the "matter/antimatter"
    imbalance; neither is inherently more "natural" than the
    other, but one became more prevalent. And IIRC, the m/am
    imbalance is now assumed to be a matter of chance in the
    original ratio. I could; of course, be mistaken in that;
    it's been years since I followed it even casually.

    https://www.biorxiv.org/content/10.1101/2024.04.23.590732v2.full.pdf

    It isn't. The left-handed molecules can be converted into right-handed ones, and vica versa, by taking them apart and reassembling them.
    For matter/antimatter there is no such possibility.
    Disassembling doesn't help,
    because you cannot turn antiquarks into quarks.

    Biological chirality is a triviality,
    the matter/antimatter imbalance is a deep problem.
    Where has all that antimatter gone?

    Well, sorta agree with the analogy if one only
    is considering the ratio. But also agree with the
    observation about matter/anti-matter not being
    able to be turned into their opposites. Just
    happened to come across the following, another
    mystery of sorts...

    https://www.livescience.com/physics-mathematics/particle-physics/a-remarkable-
    conspiracy-why-is-matter-neutral-physicist-frank-close-explores-the-mystery-in-a-new-book
    July 28, 2024

    Since the discovery of the proton and the
    electron in the 20th century, a mystery
    persists at the core of the atom: Despite
    belonging to completely different particle
    families and being radically different in
    size, the charges of these two particles
    completely balance each other out — enabling
    a universe where gravity dominates. But why?
    ...

    Not really, because protons can decay into positron + neutron,
    under suitable nuclear circumstances. (and perhaps by itself)

    So the proton charge must equal the positron charge,
    hence the electron charge.
    If there would be a charge imbalance it could be reduced
    to an in-family imbalance, either positron not equal electron,
    or quarks not precisely 1/3 and 2/3,

    Jan
    (or worse, charge not strictly conserved)

    --- SoupGate-Win32 v1.05
    * Origin: fsxNet Usenet Gateway (21:1/5)